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<FONT color="green">001</FONT>    package edu.hawaii.myisern.model;<a name="line.1"></a>
<FONT color="green">002</FONT>    <a name="line.2"></a>
<FONT color="green">003</FONT>    import java.io.IOException;<a name="line.3"></a>
<FONT color="green">004</FONT>    import java.math.BigInteger;<a name="line.4"></a>
<FONT color="green">005</FONT>    import java.util.ArrayList;<a name="line.5"></a>
<FONT color="green">006</FONT>    import java.util.Iterator;<a name="line.6"></a>
<FONT color="green">007</FONT>    import java.util.List;<a name="line.7"></a>
<FONT color="green">008</FONT>    import javax.xml.bind.JAXBException;<a name="line.8"></a>
<FONT color="green">009</FONT>    import edu.hawaii.myisern.collaborations.jaxb.CollaboratingOrganizations;<a name="line.9"></a>
<FONT color="green">010</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Collaboration;<a name="line.10"></a>
<FONT color="green">011</FONT>    import edu.hawaii.myisern.collaborations.jaxb.CollaborationTypes;<a name="line.11"></a>
<FONT color="green">012</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Collaborations;<a name="line.12"></a>
<FONT color="green">013</FONT>    import edu.hawaii.myisern.collaborations.jaxb.OutcomeTypes;<a name="line.13"></a>
<FONT color="green">014</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Years;<a name="line.14"></a>
<FONT color="green">015</FONT>    import edu.hawaii.myisern.organizations.jaxb.AffiliatedResearchers;<a name="line.15"></a>
<FONT color="green">016</FONT>    import edu.hawaii.myisern.organizations.jaxb.Organization;<a name="line.16"></a>
<FONT color="green">017</FONT>    import edu.hawaii.myisern.organizations.jaxb.Organizations;<a name="line.17"></a>
<FONT color="green">018</FONT>    import edu.hawaii.myisern.organizations.jaxb.ResearchKeywords;<a name="line.18"></a>
<FONT color="green">019</FONT>    import edu.hawaii.myisern.researchers.jaxb.Researcher;<a name="line.19"></a>
<FONT color="green">020</FONT>    import edu.hawaii.myisern.researchers.jaxb.Researchers;<a name="line.20"></a>
<FONT color="green">021</FONT>    import edu.hawaii.myisern.sanitycheck.SanityCheck;<a name="line.21"></a>
<FONT color="green">022</FONT>    import edu.hawaii.myisern.sanitycheck.SanityCheckErrorItem;<a name="line.22"></a>
<FONT color="green">023</FONT>    import edu.hawaii.myisern.xml.MyIsernXmlLoader;<a name="line.23"></a>
<FONT color="green">024</FONT>    import edu.hawaii.myisern.xml.MyIsernXmlSaver;<a name="line.24"></a>
<FONT color="green">025</FONT>    <a name="line.25"></a>
<FONT color="green">026</FONT>    /**<a name="line.26"></a>
<FONT color="green">027</FONT>     * MyIsern model.<a name="line.27"></a>
<FONT color="green">028</FONT>     * <a name="line.28"></a>
<FONT color="green">029</FONT>     * REMINDER --- Examples to look at: Request Parameters (http://lh:8080/examples)<a name="line.29"></a>
<FONT color="green">030</FONT>     * Calendar Example in jst examples (cal1.jsp and cal2.jsp for printing and adding)<a name="line.30"></a>
<FONT color="green">031</FONT>     * @author Sonwright M. Gomez<a name="line.31"></a>
<FONT color="green">032</FONT>     *<a name="line.32"></a>
<FONT color="green">033</FONT>     */<a name="line.33"></a>
<FONT color="green">034</FONT>    public class MyIsernModel {<a name="line.34"></a>
<FONT color="green">035</FONT>    <a name="line.35"></a>
<FONT color="green">036</FONT>      /** Private MyIsern Xml Loader. */<a name="line.36"></a>
<FONT color="green">037</FONT>      private MyIsernXmlLoader mixl;<a name="line.37"></a>
<FONT color="green">038</FONT>      private MyIsernXmlSaver mixs;<a name="line.38"></a>
<FONT color="green">039</FONT>      private Researchers researchers = new Researchers();<a name="line.39"></a>
<FONT color="green">040</FONT>      private Organizations organizations = new Organizations();<a name="line.40"></a>
<FONT color="green">041</FONT>      private Collaborations collaborations = new Collaborations();<a name="line.41"></a>
<FONT color="green">042</FONT>      private List&lt;Researcher&gt; listR = new ArrayList&lt;Researcher&gt;();<a name="line.42"></a>
<FONT color="green">043</FONT>      private List&lt;Organization&gt; listO = new ArrayList&lt;Organization&gt;();<a name="line.43"></a>
<FONT color="green">044</FONT>      private List&lt;Collaboration&gt; listC = new ArrayList&lt;Collaboration&gt;();<a name="line.44"></a>
<FONT color="green">045</FONT>      private String comma = ", ";<a name="line.45"></a>
<FONT color="green">046</FONT>      <a name="line.46"></a>
<FONT color="green">047</FONT>      /** The singleton StackModel instance. */<a name="line.47"></a>
<FONT color="green">048</FONT>      private static MyIsernModel theInstance = new MyIsernModel();<a name="line.48"></a>
<FONT color="green">049</FONT>      <a name="line.49"></a>
<FONT color="green">050</FONT>      /** constructor for MyIsernModel */<a name="line.50"></a>
<FONT color="green">051</FONT>      private MyIsernModel() {<a name="line.51"></a>
<FONT color="green">052</FONT>        try {<a name="line.52"></a>
<FONT color="green">053</FONT>          this.mixl = new MyIsernXmlLoader();<a name="line.53"></a>
<FONT color="green">054</FONT>          this.mixs = new MyIsernXmlSaver();<a name="line.54"></a>
<FONT color="green">055</FONT>          this.researchers = mixl.getResearchers();<a name="line.55"></a>
<FONT color="green">056</FONT>          this.organizations = mixl.getOrganizations();<a name="line.56"></a>
<FONT color="green">057</FONT>          this.collaborations = mixl.getCollaborations();<a name="line.57"></a>
<FONT color="green">058</FONT>          <a name="line.58"></a>
<FONT color="green">059</FONT>          this.listR = this.researchers.getResearcher();<a name="line.59"></a>
<FONT color="green">060</FONT>          this.listO = this.organizations.getOrganization();<a name="line.60"></a>
<FONT color="green">061</FONT>          this.listC = this.collaborations.getCollaboration();<a name="line.61"></a>
<FONT color="green">062</FONT>        }<a name="line.62"></a>
<FONT color="green">063</FONT>        catch (Exception error) {<a name="line.63"></a>
<FONT color="green">064</FONT>          // TODO Auto-generated catch block<a name="line.64"></a>
<FONT color="green">065</FONT>          error.printStackTrace();<a name="line.65"></a>
<FONT color="green">066</FONT>        }<a name="line.66"></a>
<FONT color="green">067</FONT>      }<a name="line.67"></a>
<FONT color="green">068</FONT>      /**<a name="line.68"></a>
<FONT color="green">069</FONT>       * Gets the list of errors.<a name="line.69"></a>
<FONT color="green">070</FONT>       * <a name="line.70"></a>
<FONT color="green">071</FONT>       * @return The report iterator.<a name="line.71"></a>
<FONT color="green">072</FONT>       * @throws Exception if there an error.<a name="line.72"></a>
<FONT color="green">073</FONT>       */<a name="line.73"></a>
<FONT color="green">074</FONT>      public Iterator&lt;SanityCheckErrorItem&gt; getReportIterator() throws Exception {<a name="line.74"></a>
<FONT color="green">075</FONT>        SanityCheck sanityCheck = new SanityCheck(this.collaborations,<a name="line.75"></a>
<FONT color="green">076</FONT>            this.organizations, this.researchers);<a name="line.76"></a>
<FONT color="green">077</FONT>        sanityCheck.verifyResearchers();<a name="line.77"></a>
<FONT color="green">078</FONT>        sanityCheck.verifyOrganizations();<a name="line.78"></a>
<FONT color="green">079</FONT>        sanityCheck.verifyCollaborations();<a name="line.79"></a>
<FONT color="green">080</FONT>        return sanityCheck.getReport().iterator();<a name="line.80"></a>
<FONT color="green">081</FONT>      }<a name="line.81"></a>
<FONT color="green">082</FONT>     <a name="line.82"></a>
<FONT color="green">083</FONT>      /**<a name="line.83"></a>
<FONT color="green">084</FONT>       * Get's a researcher according to string name.<a name="line.84"></a>
<FONT color="green">085</FONT>       * @param name of researcher<a name="line.85"></a>
<FONT color="green">086</FONT>       * @return Researcher if found.<a name="line.86"></a>
<FONT color="green">087</FONT>       */<a name="line.87"></a>
<FONT color="green">088</FONT>      public synchronized Researcher getResearcher(String name) {<a name="line.88"></a>
<FONT color="green">089</FONT>        Researcher researcher = new Researcher();<a name="line.89"></a>
<FONT color="green">090</FONT>        for (Researcher curr : this.listR) {<a name="line.90"></a>
<FONT color="green">091</FONT>          if (name.equalsIgnoreCase(curr.getName())) {<a name="line.91"></a>
<FONT color="green">092</FONT>            researcher = curr;<a name="line.92"></a>
<FONT color="green">093</FONT>            break;<a name="line.93"></a>
<FONT color="green">094</FONT>          }<a name="line.94"></a>
<FONT color="green">095</FONT>        }<a name="line.95"></a>
<FONT color="green">096</FONT>        return researcher;<a name="line.96"></a>
<FONT color="green">097</FONT>      }<a name="line.97"></a>
<FONT color="green">098</FONT>      <a name="line.98"></a>
<FONT color="green">099</FONT>      /**<a name="line.99"></a>
<FONT color="green">100</FONT>       * Get's Organization according to String.<a name="line.100"></a>
<FONT color="green">101</FONT>       * @param name of organization<a name="line.101"></a>
<FONT color="green">102</FONT>       * @return Organization if found.<a name="line.102"></a>
<FONT color="green">103</FONT>       */<a name="line.103"></a>
<FONT color="green">104</FONT>      public synchronized Organization getOrganization(String name) {<a name="line.104"></a>
<FONT color="green">105</FONT>        Organization organization = new Organization();<a name="line.105"></a>
<FONT color="green">106</FONT>        for (Organization curr : this.listO) {<a name="line.106"></a>
<FONT color="green">107</FONT>          if (name.equalsIgnoreCase(curr.getName())) {<a name="line.107"></a>
<FONT color="green">108</FONT>            organization = curr;<a name="line.108"></a>
<FONT color="green">109</FONT>            break;<a name="line.109"></a>
<FONT color="green">110</FONT>          }<a name="line.110"></a>
<FONT color="green">111</FONT>        }<a name="line.111"></a>
<FONT color="green">112</FONT>        return organization;<a name="line.112"></a>
<FONT color="green">113</FONT>      }<a name="line.113"></a>
<FONT color="green">114</FONT>      <a name="line.114"></a>
<FONT color="green">115</FONT>      /**<a name="line.115"></a>
<FONT color="green">116</FONT>       * Get's collaboration according to string name.<a name="line.116"></a>
<FONT color="green">117</FONT>       * @param name of collaboration<a name="line.117"></a>
<FONT color="green">118</FONT>       * @return Collaboration if found.<a name="line.118"></a>
<FONT color="green">119</FONT>       */<a name="line.119"></a>
<FONT color="green">120</FONT>      public synchronized Collaboration getCollaboration(String name) {<a name="line.120"></a>
<FONT color="green">121</FONT>        Collaboration collaboration = new Collaboration();<a name="line.121"></a>
<FONT color="green">122</FONT>        for (Collaboration curr : this.listC) {<a name="line.122"></a>
<FONT color="green">123</FONT>          if (name.equalsIgnoreCase(curr.getName())) {<a name="line.123"></a>
<FONT color="green">124</FONT>            collaboration = curr;<a name="line.124"></a>
<FONT color="green">125</FONT>            break;<a name="line.125"></a>
<FONT color="green">126</FONT>          }<a name="line.126"></a>
<FONT color="green">127</FONT>        }<a name="line.127"></a>
<FONT color="green">128</FONT>        return collaboration;<a name="line.128"></a>
<FONT color="green">129</FONT>      }<a name="line.129"></a>
<FONT color="green">130</FONT>      <a name="line.130"></a>
<FONT color="green">131</FONT>      /**<a name="line.131"></a>
<FONT color="green">132</FONT>       * Get's Id's for Researchers<a name="line.132"></a>
<FONT color="green">133</FONT>       * @return List&lt;String&gt; of Id's<a name="line.133"></a>
<FONT color="green">134</FONT>       */<a name="line.134"></a>
<FONT color="green">135</FONT>      public synchronized List&lt;String&gt; getResearcherIds() {<a name="line.135"></a>
<FONT color="green">136</FONT>        return mixl.getListResearchers();<a name="line.136"></a>
<FONT color="green">137</FONT>      }<a name="line.137"></a>
<FONT color="green">138</FONT>      <a name="line.138"></a>
<FONT color="green">139</FONT>      /**<a name="line.139"></a>
<FONT color="green">140</FONT>       * Get's Id's for Collaborations<a name="line.140"></a>
<FONT color="green">141</FONT>       * @return List&lt;String&gt; of Id's<a name="line.141"></a>
<FONT color="green">142</FONT>       */<a name="line.142"></a>
<FONT color="green">143</FONT>      public synchronized List&lt;String&gt; getCollaborationIds() {<a name="line.143"></a>
<FONT color="green">144</FONT>        return mixl.getListCollaborations();<a name="line.144"></a>
<FONT color="green">145</FONT>      }<a name="line.145"></a>
<FONT color="green">146</FONT>      <a name="line.146"></a>
<FONT color="green">147</FONT>      /**<a name="line.147"></a>
<FONT color="green">148</FONT>       * Get's Id's for Organizations<a name="line.148"></a>
<FONT color="green">149</FONT>       * @return List&lt;String&gt; of Id's<a name="line.149"></a>
<FONT color="green">150</FONT>       */<a name="line.150"></a>
<FONT color="green">151</FONT>      public synchronized List&lt;String&gt; getOrganizationIds() {<a name="line.151"></a>
<FONT color="green">152</FONT>        return mixl.getListOrganizations();<a name="line.152"></a>
<FONT color="green">153</FONT>      }<a name="line.153"></a>
<FONT color="green">154</FONT>      <a name="line.154"></a>
<FONT color="green">155</FONT>      /**<a name="line.155"></a>
<FONT color="green">156</FONT>       * Checks if researcher exists.<a name="line.156"></a>
<FONT color="green">157</FONT>       * @param possibleResearcher name of possible researcher.<a name="line.157"></a>
<FONT color="green">158</FONT>       * @return boolean if researcher exists.<a name="line.158"></a>
<FONT color="green">159</FONT>       */<a name="line.159"></a>
<FONT color="green">160</FONT>      public synchronized boolean containsResearcher(String possibleResearcher) {<a name="line.160"></a>
<FONT color="green">161</FONT>        return mixl.containsResearcher(possibleResearcher);<a name="line.161"></a>
<FONT color="green">162</FONT>      }<a name="line.162"></a>
<FONT color="green">163</FONT>      <a name="line.163"></a>
<FONT color="green">164</FONT>      /**<a name="line.164"></a>
<FONT color="green">165</FONT>       * Checks if organization exists.<a name="line.165"></a>
<FONT color="green">166</FONT>       * @param possibleOrganization name of possible organization<a name="line.166"></a>
<FONT color="green">167</FONT>       * @return boolean if organization exists.<a name="line.167"></a>
<FONT color="green">168</FONT>       */<a name="line.168"></a>
<FONT color="green">169</FONT>      public synchronized boolean containsOrganization(String possibleOrganization) {<a name="line.169"></a>
<FONT color="green">170</FONT>        return mixl.containsOrganization(possibleOrganization);<a name="line.170"></a>
<FONT color="green">171</FONT>    <a name="line.171"></a>
<FONT color="green">172</FONT>      }<a name="line.172"></a>
<FONT color="green">173</FONT>      <a name="line.173"></a>
<FONT color="green">174</FONT>      /**<a name="line.174"></a>
<FONT color="green">175</FONT>       * Checks if collaboration exists.<a name="line.175"></a>
<FONT color="green">176</FONT>       * @param possibleCollaboration name of possible collaboration<a name="line.176"></a>
<FONT color="green">177</FONT>       * @return boolean if collaboration exists.<a name="line.177"></a>
<FONT color="green">178</FONT>       */<a name="line.178"></a>
<FONT color="green">179</FONT>      public synchronized boolean containsCollaboration (String possibleCollaboration) {<a name="line.179"></a>
<FONT color="green">180</FONT>        return mixl.containsCollaboration(possibleCollaboration);<a name="line.180"></a>
<FONT color="green">181</FONT>    <a name="line.181"></a>
<FONT color="green">182</FONT>      }<a name="line.182"></a>
<FONT color="green">183</FONT>      <a name="line.183"></a>
<FONT color="green">184</FONT>      /**<a name="line.184"></a>
<FONT color="green">185</FONT>       * Get the single instance of MyIsernModel object.<a name="line.185"></a>
<FONT color="green">186</FONT>       *<a name="line.186"></a>
<FONT color="green">187</FONT>       * @return A MyIsernModel.<a name="line.187"></a>
<FONT color="green">188</FONT>       */<a name="line.188"></a>
<FONT color="green">189</FONT>      public static synchronized MyIsernModel getInstance() {<a name="line.189"></a>
<FONT color="green">190</FONT>        return MyIsernModel.theInstance;<a name="line.190"></a>
<FONT color="green">191</FONT>      }<a name="line.191"></a>
<FONT color="green">192</FONT>      <a name="line.192"></a>
<FONT color="green">193</FONT>      /**<a name="line.193"></a>
<FONT color="green">194</FONT>       * Deletes collaboration if it exists in list.<a name="line.194"></a>
<FONT color="green">195</FONT>       * @param oldCollaboration containing the Collaboration to be deleted.<a name="line.195"></a>
<FONT color="green">196</FONT>       */<a name="line.196"></a>
<FONT color="green">197</FONT>      public synchronized void deleteCollaboration(String oldCollaboration) {<a name="line.197"></a>
<FONT color="green">198</FONT>        if (this.mixl.containsCollaboration(oldCollaboration.replace(' ', '_'))) {<a name="line.198"></a>
<FONT color="green">199</FONT>          List&lt;Collaboration&gt; temp = new ArrayList&lt;Collaboration&gt;();<a name="line.199"></a>
<FONT color="green">200</FONT>         <a name="line.200"></a>
<FONT color="green">201</FONT>          //2 step process to delete a collaboration to avoid error<a name="line.201"></a>
<FONT color="green">202</FONT>          for (Collaboration curr : this.listC) {<a name="line.202"></a>
<FONT color="green">203</FONT>            if (oldCollaboration.equalsIgnoreCase(curr.getName())) {<a name="line.203"></a>
<FONT color="green">204</FONT>              temp.add(curr);<a name="line.204"></a>
<FONT color="green">205</FONT>            }<a name="line.205"></a>
<FONT color="green">206</FONT>          }<a name="line.206"></a>
<FONT color="green">207</FONT>          this.listC.removeAll(temp);<a name="line.207"></a>
<FONT color="green">208</FONT>        }<a name="line.208"></a>
<FONT color="green">209</FONT>      }<a name="line.209"></a>
<FONT color="green">210</FONT>      <a name="line.210"></a>
<FONT color="green">211</FONT>      /**<a name="line.211"></a>
<FONT color="green">212</FONT>       * Deletes organization if it exists in list.<a name="line.212"></a>
<FONT color="green">213</FONT>       * @param oldOrganization containing the organization to be deleted.<a name="line.213"></a>
<FONT color="green">214</FONT>       */<a name="line.214"></a>
<FONT color="green">215</FONT>      public synchronized void deleteOrganization(String oldOrganization) {<a name="line.215"></a>
<FONT color="green">216</FONT>        if (this.mixl.containsOrganization(oldOrganization.replace(' ', '_'))) {<a name="line.216"></a>
<FONT color="green">217</FONT>          List&lt;Organization&gt; temp = new ArrayList&lt;Organization&gt;();<a name="line.217"></a>
<FONT color="green">218</FONT>          <a name="line.218"></a>
<FONT color="green">219</FONT>          for (Organization curr : this.listO) {<a name="line.219"></a>
<FONT color="green">220</FONT>            if (oldOrganization.equalsIgnoreCase(curr.getName())) {<a name="line.220"></a>
<FONT color="green">221</FONT>              temp.add(curr);<a name="line.221"></a>
<FONT color="green">222</FONT>            }<a name="line.222"></a>
<FONT color="green">223</FONT>          }<a name="line.223"></a>
<FONT color="green">224</FONT>          this.listO.removeAll(temp);<a name="line.224"></a>
<FONT color="green">225</FONT>        }<a name="line.225"></a>
<FONT color="green">226</FONT>      }<a name="line.226"></a>
<FONT color="green">227</FONT>      <a name="line.227"></a>
<FONT color="green">228</FONT>      <a name="line.228"></a>
<FONT color="green">229</FONT>      /**<a name="line.229"></a>
<FONT color="green">230</FONT>       * Deletes a researcher if it exists in the list.<a name="line.230"></a>
<FONT color="green">231</FONT>       * @param oldResearcher containing the researcher to be deleted.<a name="line.231"></a>
<FONT color="green">232</FONT>       */<a name="line.232"></a>
<FONT color="green">233</FONT>      public synchronized void deleteResearcher(String oldResearcher) {<a name="line.233"></a>
<FONT color="green">234</FONT>        if (this.mixl.containsResearcher(oldResearcher.replace(' ', '_'))) {<a name="line.234"></a>
<FONT color="green">235</FONT>          List&lt;Researcher&gt; temp = new ArrayList&lt;Researcher&gt;();<a name="line.235"></a>
<FONT color="green">236</FONT>          <a name="line.236"></a>
<FONT color="green">237</FONT>          for (Researcher curr : this.listR) {<a name="line.237"></a>
<FONT color="green">238</FONT>            if (oldResearcher.equalsIgnoreCase(curr.getName())) {<a name="line.238"></a>
<FONT color="green">239</FONT>              temp.add(curr);<a name="line.239"></a>
<FONT color="green">240</FONT>            }<a name="line.240"></a>
<FONT color="green">241</FONT>          }<a name="line.241"></a>
<FONT color="green">242</FONT>          this.listR.removeAll(temp);<a name="line.242"></a>
<FONT color="green">243</FONT>        }<a name="line.243"></a>
<FONT color="green">244</FONT>      }<a name="line.244"></a>
<FONT color="green">245</FONT>      <a name="line.245"></a>
<FONT color="green">246</FONT>      /**<a name="line.246"></a>
<FONT color="green">247</FONT>       * Adds a new collaboration to the loader as well as the list of<a name="line.247"></a>
<FONT color="green">248</FONT>       * unique Collaboration Id's.<a name="line.248"></a>
<FONT color="green">249</FONT>       * @param newCollaboration containing the new Collaboration to be added.<a name="line.249"></a>
<FONT color="green">250</FONT>       */<a name="line.250"></a>
<FONT color="green">251</FONT>      public synchronized void addCollaboration(Collaboration newCollaboration) {<a name="line.251"></a>
<FONT color="green">252</FONT>        this.listC.add(newCollaboration);<a name="line.252"></a>
<FONT color="green">253</FONT>        mixl.addCollaboration(newCollaboration.getName());<a name="line.253"></a>
<FONT color="green">254</FONT>      }<a name="line.254"></a>
<FONT color="green">255</FONT>      <a name="line.255"></a>
<FONT color="green">256</FONT>      /**<a name="line.256"></a>
<FONT color="green">257</FONT>       * Adds a new organization to the loader as well as the list of unique<a name="line.257"></a>
<FONT color="green">258</FONT>       * Organization Id's.<a name="line.258"></a>
<FONT color="green">259</FONT>       * @param newOrganization containing the new organization to be added.<a name="line.259"></a>
<FONT color="green">260</FONT>       */<a name="line.260"></a>
<FONT color="green">261</FONT>      public synchronized void addOrganization(Organization newOrganization) {<a name="line.261"></a>
<FONT color="green">262</FONT>        this.listO.add(newOrganization);<a name="line.262"></a>
<FONT color="green">263</FONT>        mixl.addOrganization(newOrganization.getName());<a name="line.263"></a>
<FONT color="green">264</FONT>      }<a name="line.264"></a>
<FONT color="green">265</FONT>      <a name="line.265"></a>
<FONT color="green">266</FONT>      <a name="line.266"></a>
<FONT color="green">267</FONT>      /**<a name="line.267"></a>
<FONT color="green">268</FONT>       * Adds a new researcher to the loader as well as the list of unique<a name="line.268"></a>
<FONT color="green">269</FONT>       * Researcher Id's.<a name="line.269"></a>
<FONT color="green">270</FONT>       * @param newResearcher containing the new researcher to be added.<a name="line.270"></a>
<FONT color="green">271</FONT>       */<a name="line.271"></a>
<FONT color="green">272</FONT>      public synchronized void addResearcher(Researcher newResearcher) {<a name="line.272"></a>
<FONT color="green">273</FONT>        this.listR.add(newResearcher);<a name="line.273"></a>
<FONT color="green">274</FONT>        mixl.addResearcher(newResearcher.getName());<a name="line.274"></a>
<FONT color="green">275</FONT>      }<a name="line.275"></a>
<FONT color="green">276</FONT>      <a name="line.276"></a>
<FONT color="green">277</FONT>      /**<a name="line.277"></a>
<FONT color="green">278</FONT>       * Saves collaboration that has been added from Action Bean.<a name="line.278"></a>
<FONT color="green">279</FONT>       * <a name="line.279"></a>
<FONT color="green">280</FONT>       * @throws JAXBException if JAXB Exception is encountered<a name="line.280"></a>
<FONT color="green">281</FONT>       * @throws IOException if IOException is encountered<a name="line.281"></a>
<FONT color="green">282</FONT>       */<a name="line.282"></a>
<FONT color="green">283</FONT>      public synchronized void saveCollaboration() throws JAXBException, IOException {<a name="line.283"></a>
<FONT color="green">284</FONT>        Collaborations newC = new Collaborations();<a name="line.284"></a>
<FONT color="green">285</FONT>        for (Collaboration curr : this.listC) {<a name="line.285"></a>
<FONT color="green">286</FONT>          newC.getCollaboration().add(curr);<a name="line.286"></a>
<FONT color="green">287</FONT>        }<a name="line.287"></a>
<FONT color="green">288</FONT>        mixs.saveCollaboratotionsXml(newC);<a name="line.288"></a>
<FONT color="green">289</FONT>        <a name="line.289"></a>
<FONT color="green">290</FONT>      }<a name="line.290"></a>
<FONT color="green">291</FONT>      <a name="line.291"></a>
<FONT color="green">292</FONT>      /**<a name="line.292"></a>
<FONT color="green">293</FONT>       * Saves Organizations that has been added from Action Bean.<a name="line.293"></a>
<FONT color="green">294</FONT>       * <a name="line.294"></a>
<FONT color="green">295</FONT>       * @throws JAXBException if JAXB Exception is encountered<a name="line.295"></a>
<FONT color="green">296</FONT>       * @throws IOException if IOException is encountered<a name="line.296"></a>
<FONT color="green">297</FONT>       */<a name="line.297"></a>
<FONT color="green">298</FONT>      public synchronized void saveOrganizations() throws JAXBException, IOException {<a name="line.298"></a>
<FONT color="green">299</FONT>        Organizations newO = new Organizations();<a name="line.299"></a>
<FONT color="green">300</FONT>        for (Organization curr : this.listO) {<a name="line.300"></a>
<FONT color="green">301</FONT>          newO.getOrganization().add(curr);<a name="line.301"></a>
<FONT color="green">302</FONT>        }<a name="line.302"></a>
<FONT color="green">303</FONT>        mixs.saveOrganizationsXml(newO);<a name="line.303"></a>
<FONT color="green">304</FONT>      }<a name="line.304"></a>
<FONT color="green">305</FONT>      <a name="line.305"></a>
<FONT color="green">306</FONT>      /**<a name="line.306"></a>
<FONT color="green">307</FONT>       * Saves Researcher that has been added from Action Bean.<a name="line.307"></a>
<FONT color="green">308</FONT>       * <a name="line.308"></a>
<FONT color="green">309</FONT>       * @throws JAXBException if JAXB Exception is encountered<a name="line.309"></a>
<FONT color="green">310</FONT>       * @throws IOException if IOException is encountered<a name="line.310"></a>
<FONT color="green">311</FONT>       */<a name="line.311"></a>
<FONT color="green">312</FONT>      public synchronized void saveResearcher() throws JAXBException, IOException {<a name="line.312"></a>
<FONT color="green">313</FONT>        Researchers newR = new Researchers();<a name="line.313"></a>
<FONT color="green">314</FONT>        for (Researcher curr : this.listR) {<a name="line.314"></a>
<FONT color="green">315</FONT>          newR.getResearcher().add(curr);<a name="line.315"></a>
<FONT color="green">316</FONT>        }<a name="line.316"></a>
<FONT color="green">317</FONT>        try {<a name="line.317"></a>
<FONT color="green">318</FONT>        mixs.saveResearchersXml(newR);<a name="line.318"></a>
<FONT color="green">319</FONT>        }<a name="line.319"></a>
<FONT color="green">320</FONT>        catch (Exception e) {<a name="line.320"></a>
<FONT color="green">321</FONT>          e.getMessage();<a name="line.321"></a>
<FONT color="green">322</FONT>        }<a name="line.322"></a>
<FONT color="green">323</FONT>      }<a name="line.323"></a>
<FONT color="green">324</FONT>      <a name="line.324"></a>
<FONT color="green">325</FONT>      /**<a name="line.325"></a>
<FONT color="green">326</FONT>       * Converts Affiliated Researchers to a string with commas.<a name="line.326"></a>
<FONT color="green">327</FONT>       * @param ar containing Affiliated Researchers<a name="line.327"></a>
<FONT color="green">328</FONT>       * @return String contains string of Affiliated Researchers.<a name="line.328"></a>
<FONT color="green">329</FONT>       */<a name="line.329"></a>
<FONT color="green">330</FONT>      public synchronized String arToString(AffiliatedResearchers ar) {<a name="line.330"></a>
<FONT color="green">331</FONT>        List &lt;AffiliatedResearchers&gt; arList = new ArrayList&lt;AffiliatedResearchers&gt;();<a name="line.331"></a>
<FONT color="green">332</FONT>        arList.add(ar);<a name="line.332"></a>
<FONT color="green">333</FONT>        String string = "";<a name="line.333"></a>
<FONT color="green">334</FONT>        for (AffiliatedResearchers curr : arList) {<a name="line.334"></a>
<FONT color="green">335</FONT>          String temp = curr.getAffiliatedResearcher().toString()<a name="line.335"></a>
<FONT color="green">336</FONT>          .replace('[', ' ').replace(']', ' ').trim();<a name="line.336"></a>
<FONT color="green">337</FONT>          string += temp + comma;<a name="line.337"></a>
<FONT color="green">338</FONT>        }<a name="line.338"></a>
<FONT color="green">339</FONT>        return string;<a name="line.339"></a>
<FONT color="green">340</FONT>      }<a name="line.340"></a>
<FONT color="green">341</FONT>      <a name="line.341"></a>
<FONT color="green">342</FONT>      /**<a name="line.342"></a>
<FONT color="green">343</FONT>       * Converts Research Keywords to a string with commas.<a name="line.343"></a>
<FONT color="green">344</FONT>       * @param rk containing research keywords to be converted.<a name="line.344"></a>
<FONT color="green">345</FONT>       * @return String contains string of research keywords.<a name="line.345"></a>
<FONT color="green">346</FONT>       */<a name="line.346"></a>
<FONT color="green">347</FONT>      public synchronized String rkToString(ResearchKeywords rk) {<a name="line.347"></a>
<FONT color="green">348</FONT>        List&lt;ResearchKeywords&gt; rkList = new ArrayList&lt;ResearchKeywords&gt;();<a name="line.348"></a>
<FONT color="green">349</FONT>        rkList.add(rk);<a name="line.349"></a>
<FONT color="green">350</FONT>        String string = "";<a name="line.350"></a>
<FONT color="green">351</FONT>        for (ResearchKeywords curr : rkList) {<a name="line.351"></a>
<FONT color="green">352</FONT>          String temp = curr.getResearchKeyword().toString()<a name="line.352"></a>
<FONT color="green">353</FONT>          .replace('[', ' ').replace(']', ' ').trim();<a name="line.353"></a>
<FONT color="green">354</FONT>          string += temp + comma;<a name="line.354"></a>
<FONT color="green">355</FONT>        }<a name="line.355"></a>
<FONT color="green">356</FONT>        return string;<a name="line.356"></a>
<FONT color="green">357</FONT>      }<a name="line.357"></a>
<FONT color="green">358</FONT>      <a name="line.358"></a>
<FONT color="green">359</FONT>      /**<a name="line.359"></a>
<FONT color="green">360</FONT>       * Converts Collaborating organizations list to a string with commas.<a name="line.360"></a>
<FONT color="green">361</FONT>       * @param co containing organizations that are in collaboration.<a name="line.361"></a>
<FONT color="green">362</FONT>       * @return String containing converted string from a list.<a name="line.362"></a>
<FONT color="green">363</FONT>       */<a name="line.363"></a>
<FONT color="green">364</FONT>      public synchronized String coToString(CollaboratingOrganizations co) {<a name="line.364"></a>
<FONT color="green">365</FONT>        List&lt;CollaboratingOrganizations&gt; coList = new ArrayList&lt;CollaboratingOrganizations&gt;();<a name="line.365"></a>
<FONT color="green">366</FONT>        coList.add(co);<a name="line.366"></a>
<FONT color="green">367</FONT>        String string = "";<a name="line.367"></a>
<FONT color="green">368</FONT>        for (CollaboratingOrganizations curr : coList) {<a name="line.368"></a>
<FONT color="green">369</FONT>          String temp = curr.getCollaboratingOrganization().toString()<a name="line.369"></a>
<FONT color="green">370</FONT>          .replace('[', ' ').replace(']', ' ').trim();<a name="line.370"></a>
<FONT color="green">371</FONT>          string += temp + comma;<a name="line.371"></a>
<FONT color="green">372</FONT>        }<a name="line.372"></a>
<FONT color="green">373</FONT>        return string;<a name="line.373"></a>
<FONT color="green">374</FONT>      }<a name="line.374"></a>
<FONT color="green">375</FONT>      <a name="line.375"></a>
<FONT color="green">376</FONT>      /**<a name="line.376"></a>
<FONT color="green">377</FONT>       * Converts Collaboration Types to a string.<a name="line.377"></a>
<FONT color="green">378</FONT>       * @param ct containing collaboration types to be converted.<a name="line.378"></a>
<FONT color="green">379</FONT>       * @return String containing converted string from collaboration types.<a name="line.379"></a>
<FONT color="green">380</FONT>       */<a name="line.380"></a>
<FONT color="green">381</FONT>      public synchronized String ctToString(CollaborationTypes ct) {<a name="line.381"></a>
<FONT color="green">382</FONT>        List&lt;CollaborationTypes&gt; ctList = new ArrayList&lt;CollaborationTypes&gt;();<a name="line.382"></a>
<FONT color="green">383</FONT>        ctList.add(ct);<a name="line.383"></a>
<FONT color="green">384</FONT>        String string = "";<a name="line.384"></a>
<FONT color="green">385</FONT>        for (CollaborationTypes curr : ctList) {<a name="line.385"></a>
<FONT color="green">386</FONT>          String temp = curr.getCollaborationType().toString()<a name="line.386"></a>
<FONT color="green">387</FONT>          .replace('[', ' ').replace(']', ' ').trim();<a name="line.387"></a>
<FONT color="green">388</FONT>          string += temp + comma;<a name="line.388"></a>
<FONT color="green">389</FONT>        }<a name="line.389"></a>
<FONT color="green">390</FONT>        return string;<a name="line.390"></a>
<FONT color="green">391</FONT>      }<a name="line.391"></a>
<FONT color="green">392</FONT>      <a name="line.392"></a>
<FONT color="green">393</FONT>      /**<a name="line.393"></a>
<FONT color="green">394</FONT>       * Converts Years to a string.<a name="line.394"></a>
<FONT color="green">395</FONT>       * @param years to be converted to string.<a name="line.395"></a>
<FONT color="green">396</FONT>       * @return String representation of years with commas.<a name="line.396"></a>
<FONT color="green">397</FONT>       */<a name="line.397"></a>
<FONT color="green">398</FONT>      public synchronized String yearsToString(Years years) {<a name="line.398"></a>
<FONT color="green">399</FONT>        List&lt;Years&gt; yList = new ArrayList&lt;Years&gt;();<a name="line.399"></a>
<FONT color="green">400</FONT>        yList.add(years);<a name="line.400"></a>
<FONT color="green">401</FONT>        String string = "";<a name="line.401"></a>
<FONT color="green">402</FONT>        for (Years curr : yList) {<a name="line.402"></a>
<FONT color="green">403</FONT>          String temp = curr.getYear().toString().replace('[', ' ').replace(']', ' ').trim();<a name="line.403"></a>
<FONT color="green">404</FONT>          string += temp + comma;<a name="line.404"></a>
<FONT color="green">405</FONT>        }<a name="line.405"></a>
<FONT color="green">406</FONT>        <a name="line.406"></a>
<FONT color="green">407</FONT>        return string;<a name="line.407"></a>
<FONT color="green">408</FONT>      }<a name="line.408"></a>
<FONT color="green">409</FONT>      <a name="line.409"></a>
<FONT color="green">410</FONT>      /**<a name="line.410"></a>
<FONT color="green">411</FONT>       * Converts Outcome types to string.<a name="line.411"></a>
<FONT color="green">412</FONT>       * @param ot containing Outcome types to be converted.<a name="line.412"></a>
<FONT color="green">413</FONT>       * @return String representation of Outcome types with commas.<a name="line.413"></a>
<FONT color="green">414</FONT>       */<a name="line.414"></a>
<FONT color="green">415</FONT>      public synchronized String otToString(OutcomeTypes ot) {<a name="line.415"></a>
<FONT color="green">416</FONT>        List&lt;OutcomeTypes&gt; otList = new ArrayList&lt;OutcomeTypes&gt;();<a name="line.416"></a>
<FONT color="green">417</FONT>        otList.add(ot);<a name="line.417"></a>
<FONT color="green">418</FONT>        String string = "";<a name="line.418"></a>
<FONT color="green">419</FONT>        for (OutcomeTypes curr : otList) {<a name="line.419"></a>
<FONT color="green">420</FONT>          String temp = curr.getOutcomeType().toString().replace('[', ' ').replace(']', ' ').trim();<a name="line.420"></a>
<FONT color="green">421</FONT>          string += temp + comma;<a name="line.421"></a>
<FONT color="green">422</FONT>        }<a name="line.422"></a>
<FONT color="green">423</FONT>        return string;<a name="line.423"></a>
<FONT color="green">424</FONT>      }<a name="line.424"></a>
<FONT color="green">425</FONT>      <a name="line.425"></a>
<FONT color="green">426</FONT>      /**<a name="line.426"></a>
<FONT color="green">427</FONT>       * Checks if year entered is valid.<a name="line.427"></a>
<FONT color="green">428</FONT>       * <a name="line.428"></a>
<FONT color="green">429</FONT>       * @param currentYear String that contains year to be converted and examined.<a name="line.429"></a>
<FONT color="green">430</FONT>       * @return boolean whether year entered is valid.<a name="line.430"></a>
<FONT color="green">431</FONT>       */<a name="line.431"></a>
<FONT color="green">432</FONT>      public boolean yearIsValid(String currentYear) {<a name="line.432"></a>
<FONT color="green">433</FONT>        boolean yearIsValid = false;<a name="line.433"></a>
<FONT color="green">434</FONT>        try {<a name="line.434"></a>
<FONT color="green">435</FONT>          BigInteger bigNum = new BigInteger(currentYear);<a name="line.435"></a>
<FONT color="green">436</FONT>          if (bigNum.intValue() &gt;= 1990 &amp;&amp; bigNum.intValue() &lt;= 2010) {<a name="line.436"></a>
<FONT color="green">437</FONT>            yearIsValid = true;<a name="line.437"></a>
<FONT color="green">438</FONT>          }<a name="line.438"></a>
<FONT color="green">439</FONT>        }<a name="line.439"></a>
<FONT color="green">440</FONT>        catch (Exception e) {<a name="line.440"></a>
<FONT color="green">441</FONT>          System.out.println("Year format wrong.");<a name="line.441"></a>
<FONT color="green">442</FONT>          yearIsValid = false;<a name="line.442"></a>
<FONT color="green">443</FONT>        }<a name="line.443"></a>
<FONT color="green">444</FONT>        return yearIsValid;<a name="line.444"></a>
<FONT color="green">445</FONT>      }<a name="line.445"></a>
<FONT color="green">446</FONT>      <a name="line.446"></a>
<FONT color="green">447</FONT>      /**<a name="line.447"></a>
<FONT color="green">448</FONT>       * Gets the iterator attribute of the Organization object.<a name="line.448"></a>
<FONT color="green">449</FONT>       *<a name="line.449"></a>
<FONT color="green">450</FONT>       * @return The iterator value.<a name="line.450"></a>
<FONT color="green">451</FONT>       */<a name="line.451"></a>
<FONT color="green">452</FONT>      public synchronized Iterator&lt;Organization&gt; oIterator() {<a name="line.452"></a>
<FONT color="green">453</FONT>        return this.listO.iterator();<a name="line.453"></a>
<FONT color="green">454</FONT>      }<a name="line.454"></a>
<FONT color="green">455</FONT>      <a name="line.455"></a>
<FONT color="green">456</FONT>      /**<a name="line.456"></a>
<FONT color="green">457</FONT>       * Gets the iterator attribute of the Researcher object.<a name="line.457"></a>
<FONT color="green">458</FONT>       *<a name="line.458"></a>
<FONT color="green">459</FONT>       * @return The iterator value.<a name="line.459"></a>
<FONT color="green">460</FONT>       */<a name="line.460"></a>
<FONT color="green">461</FONT>      public synchronized Iterator&lt;Researcher&gt; rIterator() {<a name="line.461"></a>
<FONT color="green">462</FONT>        return this.listR.iterator();<a name="line.462"></a>
<FONT color="green">463</FONT>      }<a name="line.463"></a>
<FONT color="green">464</FONT>      <a name="line.464"></a>
<FONT color="green">465</FONT>      /**<a name="line.465"></a>
<FONT color="green">466</FONT>       * Gets the iterator attribute of the Collaboration object.<a name="line.466"></a>
<FONT color="green">467</FONT>       *<a name="line.467"></a>
<FONT color="green">468</FONT>       * @return The iterator value.<a name="line.468"></a>
<FONT color="green">469</FONT>       */<a name="line.469"></a>
<FONT color="green">470</FONT>      public synchronized Iterator&lt;Collaboration&gt; cIterator() {<a name="line.470"></a>
<FONT color="green">471</FONT>        return this.listC.iterator();<a name="line.471"></a>
<FONT color="green">472</FONT>      }<a name="line.472"></a>
<FONT color="green">473</FONT>    }<a name="line.473"></a>




























































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